From df64d51445d85b07f5191e5f9f32aabb00603a32 Mon Sep 17 00:00:00 2001 From: Pierre Hubert Date: Wed, 24 May 2023 13:52:24 +0200 Subject: [PATCH] Initialize database structure --- README.md | 36 +- geneit_backend/.env | 1 + geneit_backend/.gitignore | 1 + geneit_backend/Cargo.lock | 414 ++++++++++++++++++ geneit_backend/Cargo.toml | 2 + geneit_backend/diesel.toml | 8 + geneit_backend/migrations/.keep | 0 .../down.sql | 6 + .../up.sql | 36 ++ .../2023-05-24-102711_create_users/down.sql | 2 + .../2023-05-24-102711_create_users/up.sql | 12 + geneit_backend/src/schema.rs | 15 + 12 files changed, 532 insertions(+), 1 deletion(-) create mode 100644 geneit_backend/.env create mode 100644 geneit_backend/Cargo.lock create mode 100644 geneit_backend/diesel.toml create mode 100644 geneit_backend/migrations/.keep create mode 100644 geneit_backend/migrations/00000000000000_diesel_initial_setup/down.sql create mode 100644 geneit_backend/migrations/00000000000000_diesel_initial_setup/up.sql create mode 100644 geneit_backend/migrations/2023-05-24-102711_create_users/down.sql create mode 100644 geneit_backend/migrations/2023-05-24-102711_create_users/up.sql create mode 100644 geneit_backend/src/schema.rs diff --git a/README.md b/README.md index 9fefa23..e997646 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,37 @@ # GeneIT -WIP project \ No newline at end of file +WIP project + +## Setup dev env +1. Install prerequisites: + 1. docker + 2. docker-compose + 3. rust + + +2. Start services: +```bash +cd geneit_backend +docker-compose up +``` + + +3. Install Diesel CLI: + +```bash +sudo apt install libpq5 libpq-dev +cargo install diesel_cli --no-default-features --features postgres +``` + + +4. Initialize database: + +```bash +diesel migation run +``` + +> Note: You can access the database directly using this command: +> +> ```bash +> PGPASSWORD=pass psql -h localhost -p 5432 -U user -d bioclimsol +> ``` \ No newline at end of file diff --git a/geneit_backend/.env b/geneit_backend/.env new file mode 100644 index 0000000..1f5789a --- /dev/null +++ b/geneit_backend/.env @@ -0,0 +1 @@ +DATABASE_URL=postgres://user:pass@localhost/geneit diff --git a/geneit_backend/.gitignore b/geneit_backend/.gitignore index af03ac7..4bb3162 100644 --- a/geneit_backend/.gitignore +++ b/geneit_backend/.gitignore @@ -1,2 +1,3 @@ target/ storage/ +.idea \ No newline at end of file diff --git a/geneit_backend/Cargo.lock b/geneit_backend/Cargo.lock new file mode 100644 index 0000000..963d236 --- /dev/null +++ b/geneit_backend/Cargo.lock @@ -0,0 +1,414 @@ +# This file is automatically @generated by Cargo. +# It is not intended for manual editing. +version = 3 + +[[package]] +name = "anstream" +version 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b/geneit_backend/diesel.toml @@ -0,0 +1,8 @@ +# For documentation on how to configure this file, +# see https://diesel.rs/guides/configuring-diesel-cli + +[print_schema] +file = "src/schema.rs" + +[migrations_directory] +dir = "migrations" diff --git a/geneit_backend/migrations/.keep b/geneit_backend/migrations/.keep new file mode 100644 index 0000000..e69de29 diff --git a/geneit_backend/migrations/00000000000000_diesel_initial_setup/down.sql b/geneit_backend/migrations/00000000000000_diesel_initial_setup/down.sql new file mode 100644 index 0000000..a9f5260 --- /dev/null +++ b/geneit_backend/migrations/00000000000000_diesel_initial_setup/down.sql @@ -0,0 +1,6 @@ +-- This file was automatically created by Diesel to setup helper functions +-- and other internal bookkeeping. This file is safe to edit, any future +-- changes will be added to existing projects as new migrations. + +DROP FUNCTION IF EXISTS diesel_manage_updated_at(_tbl regclass); +DROP FUNCTION IF EXISTS diesel_set_updated_at(); diff --git a/geneit_backend/migrations/00000000000000_diesel_initial_setup/up.sql b/geneit_backend/migrations/00000000000000_diesel_initial_setup/up.sql new file mode 100644 index 0000000..d68895b --- /dev/null +++ b/geneit_backend/migrations/00000000000000_diesel_initial_setup/up.sql @@ -0,0 +1,36 @@ +-- This file was automatically created by Diesel to setup helper functions +-- and other internal bookkeeping. This file is safe to edit, any future +-- changes will be added to existing projects as new migrations. + + + + +-- Sets up a trigger for the given table to automatically set a column called +-- `updated_at` whenever the row is modified (unless `updated_at` was included +-- in the modified columns) +-- +-- # Example +-- +-- ```sql +-- CREATE TABLE users (id SERIAL PRIMARY KEY, updated_at TIMESTAMP NOT NULL DEFAULT NOW()); +-- +-- SELECT diesel_manage_updated_at('users'); +-- ``` +CREATE OR REPLACE FUNCTION diesel_manage_updated_at(_tbl regclass) RETURNS VOID AS $$ +BEGIN + EXECUTE format('CREATE TRIGGER set_updated_at BEFORE UPDATE ON %s + FOR EACH ROW EXECUTE PROCEDURE diesel_set_updated_at()', _tbl); +END; +$$ LANGUAGE plpgsql; + +CREATE OR REPLACE FUNCTION diesel_set_updated_at() RETURNS trigger AS $$ +BEGIN + IF ( + NEW IS DISTINCT FROM OLD AND + NEW.updated_at IS NOT DISTINCT FROM OLD.updated_at + ) THEN + NEW.updated_at := current_timestamp; + END IF; + RETURN NEW; +END; +$$ LANGUAGE plpgsql; diff --git a/geneit_backend/migrations/2023-05-24-102711_create_users/down.sql b/geneit_backend/migrations/2023-05-24-102711_create_users/down.sql new file mode 100644 index 0000000..f1c3bfb --- /dev/null +++ b/geneit_backend/migrations/2023-05-24-102711_create_users/down.sql @@ -0,0 +1,2 @@ +-- This file should undo anything in `up.sql` +DROP table users; \ No newline at end of file diff --git a/geneit_backend/migrations/2023-05-24-102711_create_users/up.sql b/geneit_backend/migrations/2023-05-24-102711_create_users/up.sql new file mode 100644 index 0000000..187c96e --- /dev/null +++ b/geneit_backend/migrations/2023-05-24-102711_create_users/up.sql @@ -0,0 +1,12 @@ +-- Create table +CREATE TABLE users ( + id SERIAL PRIMARY KEY, + email VARCHAR(255) NOT NULL, + password VARCHAR NULL, + reset_password_token VARCHAR(150) NULL, + time_create BIGINT NOT NULL, + time_gen_reset_token BIGINT NOT NULL DEFAULT 0, + time_activate BIGINT NOT NULL DEFAULT 0, + active BOOLEAN NOT NULL DEFAULT TRUE, + admin BOOLEAN NOT NULL DEFAULT FALSE +) \ No newline at end of file diff --git a/geneit_backend/src/schema.rs b/geneit_backend/src/schema.rs new file mode 100644 index 0000000..a4243e4 --- /dev/null +++ b/geneit_backend/src/schema.rs @@ -0,0 +1,15 @@ +// @generated automatically by Diesel CLI. + +diesel::table! { + users (id) { + id -> Int4, + email -> Varchar, + password -> Nullable, + reset_password_token -> Nullable, + time_create -> Int8, + time_gen_reset_token -> Int8, + time_activate -> Int8, + active -> Bool, + admin -> Bool, + } +}