Initialize database structure
This commit is contained in:
parent
6a265d9a72
commit
df64d51445
34
README.md
34
README.md
@ -1,3 +1,37 @@
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# GeneIT
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# GeneIT
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WIP project
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WIP project
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## Setup dev env
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1. Install prerequisites:
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1. docker
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2. docker-compose
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3. rust
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2. Start services:
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```bash
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cd geneit_backend
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docker-compose up
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```
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3. Install Diesel CLI:
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```bash
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sudo apt install libpq5 libpq-dev
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cargo install diesel_cli --no-default-features --features postgres
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```
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4. Initialize database:
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```bash
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diesel migation run
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```
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> Note: You can access the database directly using this command:
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>
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> ```bash
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> PGPASSWORD=pass psql -h localhost -p 5432 -U user -d bioclimsol
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> ```
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1
geneit_backend/.env
Normal file
1
geneit_backend/.env
Normal file
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DATABASE_URL=postgres://user:pass@localhost/geneit
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1
geneit_backend/.gitignore
vendored
1
geneit_backend/.gitignore
vendored
@ -1,2 +1,3 @@
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target/
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target/
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storage/
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storage/
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.idea
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414
geneit_backend/Cargo.lock
generated
Normal file
414
geneit_backend/Cargo.lock
generated
Normal file
@ -0,0 +1,414 @@
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# This file is automatically @generated by Cargo.
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# It is not intended for manual editing.
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version = 3
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[[package]]
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name = "anstream"
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version = "0.3.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "0ca84f3628370c59db74ee214b3263d58f9aadd9b4fe7e711fd87dc452b7f163"
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dependencies = [
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"anstyle",
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"anstyle-parse",
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"anstyle-query",
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"anstyle-wincon",
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"colorchoice",
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"is-terminal",
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"utf8parse",
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]
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[[package]]
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name = "anstyle"
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version = "1.0.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "41ed9a86bf92ae6580e0a31281f65a1b1d867c0cc68d5346e2ae128dddfa6a7d"
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[[package]]
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name = "anstyle-parse"
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version = "0.2.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "e765fd216e48e067936442276d1d57399e37bce53c264d6fefbe298080cb57ee"
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|
dependencies = [
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"utf8parse",
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]
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[[package]]
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name = "anstyle-query"
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version = "1.0.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "5ca11d4be1bab0c8bc8734a9aa7bf4ee8316d462a08c6ac5052f888fef5b494b"
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dependencies = [
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"windows-sys",
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]
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[[package]]
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name = "anstyle-wincon"
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version = "1.0.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "180abfa45703aebe0093f79badacc01b8fd4ea2e35118747e5811127f926e188"
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dependencies = [
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"anstyle",
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"windows-sys",
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]
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[[package]]
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name = "bitflags"
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version = "1.3.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "bef38d45163c2f1dde094a7dfd33ccf595c92905c8f8f4fdc18d06fb1037718a"
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[[package]]
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name = "byteorder"
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version = "1.4.3"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "14c189c53d098945499cdfa7ecc63567cf3886b3332b312a5b4585d8d3a6a610"
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[[package]]
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name = "cc"
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version = "1.0.79"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "50d30906286121d95be3d479533b458f87493b30a4b5f79a607db8f5d11aa91f"
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[[package]]
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name = "clap"
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version = "4.3.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "93aae7a4192245f70fe75dd9157fc7b4a5bf53e88d30bd4396f7d8f9284d5acc"
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dependencies = [
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"clap_builder",
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"clap_derive",
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"once_cell",
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]
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[[package]]
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name = "clap_builder"
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version = "4.3.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "4f423e341edefb78c9caba2d9c7f7687d0e72e89df3ce3394554754393ac3990"
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dependencies = [
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"anstream",
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"anstyle",
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"bitflags",
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"clap_lex",
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"strsim",
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]
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[[package]]
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name = "clap_derive"
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version = "4.3.0"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "191d9573962933b4027f932c600cd252ce27a8ad5979418fe78e43c07996f27b"
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|
dependencies = [
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|
"heck",
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"proc-macro2",
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"quote",
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"syn 2.0.16",
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]
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[[package]]
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name = "clap_lex"
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version = "0.5.0"
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "2da6da31387c7e4ef160ffab6d5e7f00c42626fe39aea70a7b0f1773f7dd6c1b"
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|
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|
[[package]]
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name = "colorchoice"
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version = "1.0.0"
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "acbf1af155f9b9ef647e42cdc158db4b64a1b61f743629225fde6f3e0be2a7c7"
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[[package]]
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name = "diesel"
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version = "2.0.4"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "72eb77396836a4505da85bae0712fa324b74acfe1876d7c2f7e694ef3d0ee373"
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|
dependencies = [
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"bitflags",
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"byteorder",
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"diesel_derives",
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"itoa",
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"pq-sys",
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]
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[[package]]
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name = "diesel_derives"
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version = "2.0.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "0ad74fdcf086be3d4fdd142f67937678fe60ed431c3b2f08599e7687269410c4"
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dependencies = [
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"proc-macro-error",
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"proc-macro2",
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"quote",
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"syn 1.0.109",
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]
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[[package]]
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name = "errno"
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version = "0.3.1"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "4bcfec3a70f97c962c307b2d2c56e358cf1d00b558d74262b5f929ee8cc7e73a"
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dependencies = [
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"errno-dragonfly",
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"libc",
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"windows-sys",
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]
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[[package]]
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name = "errno-dragonfly"
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version = "0.1.2"
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source = "registry+https://github.com/rust-lang/crates.io-index"
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checksum = "aa68f1b12764fab894d2755d2518754e71b4fd80ecfb822714a1206c2aab39bf"
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|
dependencies = [
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|
"cc",
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"libc",
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]
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[[package]]
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name = "geneit_backend"
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|
version = "0.1.0"
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dependencies = [
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"clap",
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"diesel",
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]
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[[package]]
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name = "heck"
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|
version = "0.4.1"
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "95505c38b4572b2d910cecb0281560f54b440a19336cbbcb27bf6ce6adc6f5a8"
|
||||||
|
|
||||||
|
[[package]]
|
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|
name = "hermit-abi"
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||||||
|
version = "0.3.1"
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "fed44880c466736ef9a5c5b5facefb5ed0785676d0c02d612db14e54f0d84286"
|
||||||
|
|
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|
[[package]]
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||||||
|
name = "io-lifetimes"
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|
version = "1.0.10"
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
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|
checksum = "9c66c74d2ae7e79a5a8f7ac924adbe38ee42a859c6539ad869eb51f0b52dc220"
|
||||||
|
dependencies = [
|
||||||
|
"hermit-abi",
|
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|
"libc",
|
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|
"windows-sys",
|
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|
]
|
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|
|
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|
[[package]]
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||||||
|
name = "is-terminal"
|
||||||
|
version = "0.4.7"
|
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "adcf93614601c8129ddf72e2d5633df827ba6551541c6d8c59520a371475be1f"
|
||||||
|
dependencies = [
|
||||||
|
"hermit-abi",
|
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|
"io-lifetimes",
|
||||||
|
"rustix",
|
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|
"windows-sys",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "itoa"
|
||||||
|
version = "1.0.6"
|
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|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "453ad9f582a441959e5f0d088b02ce04cfe8d51a8eaf077f12ac6d3e94164ca6"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "libc"
|
||||||
|
version = "0.2.144"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
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|
checksum = "2b00cc1c228a6782d0f076e7b232802e0c5689d41bb5df366f2a6b6621cfdfe1"
|
||||||
|
|
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|
[[package]]
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|
name = "linux-raw-sys"
|
||||||
|
version = "0.3.8"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "ef53942eb7bf7ff43a617b3e2c1c4a5ecf5944a7c1bc12d7ee39bbb15e5c1519"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "once_cell"
|
||||||
|
version = "1.17.1"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "b7e5500299e16ebb147ae15a00a942af264cf3688f47923b8fc2cd5858f23ad3"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "pq-sys"
|
||||||
|
version = "0.4.8"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "31c0052426df997c0cbd30789eb44ca097e3541717a7b8fa36b1c464ee7edebd"
|
||||||
|
dependencies = [
|
||||||
|
"vcpkg",
|
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|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "proc-macro-error"
|
||||||
|
version = "1.0.4"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "da25490ff9892aab3fcf7c36f08cfb902dd3e71ca0f9f9517bea02a73a5ce38c"
|
||||||
|
dependencies = [
|
||||||
|
"proc-macro-error-attr",
|
||||||
|
"proc-macro2",
|
||||||
|
"quote",
|
||||||
|
"syn 1.0.109",
|
||||||
|
"version_check",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "proc-macro-error-attr"
|
||||||
|
version = "1.0.4"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "a1be40180e52ecc98ad80b184934baf3d0d29f979574e439af5a55274b35f869"
|
||||||
|
dependencies = [
|
||||||
|
"proc-macro2",
|
||||||
|
"quote",
|
||||||
|
"version_check",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "proc-macro2"
|
||||||
|
version = "1.0.58"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "fa1fb82fc0c281dd9671101b66b771ebbe1eaf967b96ac8740dcba4b70005ca8"
|
||||||
|
dependencies = [
|
||||||
|
"unicode-ident",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "quote"
|
||||||
|
version = "1.0.27"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "8f4f29d145265ec1c483c7c654450edde0bfe043d3938d6972630663356d9500"
|
||||||
|
dependencies = [
|
||||||
|
"proc-macro2",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "rustix"
|
||||||
|
version = "0.37.19"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "acf8729d8542766f1b2cf77eb034d52f40d375bb8b615d0b147089946e16613d"
|
||||||
|
dependencies = [
|
||||||
|
"bitflags",
|
||||||
|
"errno",
|
||||||
|
"io-lifetimes",
|
||||||
|
"libc",
|
||||||
|
"linux-raw-sys",
|
||||||
|
"windows-sys",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "strsim"
|
||||||
|
version = "0.10.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "syn"
|
||||||
|
version = "1.0.109"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237"
|
||||||
|
dependencies = [
|
||||||
|
"proc-macro2",
|
||||||
|
"quote",
|
||||||
|
"unicode-ident",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "syn"
|
||||||
|
version = "2.0.16"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "a6f671d4b5ffdb8eadec19c0ae67fe2639df8684bd7bc4b83d986b8db549cf01"
|
||||||
|
dependencies = [
|
||||||
|
"proc-macro2",
|
||||||
|
"quote",
|
||||||
|
"unicode-ident",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "unicode-ident"
|
||||||
|
version = "1.0.8"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "e5464a87b239f13a63a501f2701565754bae92d243d4bb7eb12f6d57d2269bf4"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "utf8parse"
|
||||||
|
version = "0.2.1"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "711b9620af191e0cdc7468a8d14e709c3dcdb115b36f838e601583af800a370a"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "vcpkg"
|
||||||
|
version = "0.2.15"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "accd4ea62f7bb7a82fe23066fb0957d48ef677f6eeb8215f372f52e48bb32426"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "version_check"
|
||||||
|
version = "0.9.4"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "49874b5167b65d7193b8aba1567f5c7d93d001cafc34600cee003eda787e483f"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows-sys"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "677d2418bec65e3338edb076e806bc1ec15693c5d0104683f2efe857f61056a9"
|
||||||
|
dependencies = [
|
||||||
|
"windows-targets",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows-targets"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "7b1eb6f0cd7c80c79759c929114ef071b87354ce476d9d94271031c0497adfd5"
|
||||||
|
dependencies = [
|
||||||
|
"windows_aarch64_gnullvm",
|
||||||
|
"windows_aarch64_msvc",
|
||||||
|
"windows_i686_gnu",
|
||||||
|
"windows_i686_msvc",
|
||||||
|
"windows_x86_64_gnu",
|
||||||
|
"windows_x86_64_gnullvm",
|
||||||
|
"windows_x86_64_msvc",
|
||||||
|
]
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_aarch64_gnullvm"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "91ae572e1b79dba883e0d315474df7305d12f569b400fcf90581b06062f7e1bc"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_aarch64_msvc"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "b2ef27e0d7bdfcfc7b868b317c1d32c641a6fe4629c171b8928c7b08d98d7cf3"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_i686_gnu"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "622a1962a7db830d6fd0a69683c80a18fda201879f0f447f065a3b7467daa241"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_i686_msvc"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "4542c6e364ce21bf45d69fdd2a8e455fa38d316158cfd43b3ac1c5b1b19f8e00"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_x86_64_gnu"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "ca2b8a661f7628cbd23440e50b05d705db3686f894fc9580820623656af974b1"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_x86_64_gnullvm"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "7896dbc1f41e08872e9d5e8f8baa8fdd2677f29468c4e156210174edc7f7b953"
|
||||||
|
|
||||||
|
[[package]]
|
||||||
|
name = "windows_x86_64_msvc"
|
||||||
|
version = "0.48.0"
|
||||||
|
source = "registry+https://github.com/rust-lang/crates.io-index"
|
||||||
|
checksum = "1a515f5799fe4961cb532f983ce2b23082366b898e52ffbce459c86f67c8378a"
|
@ -6,3 +6,5 @@ edition = "2021"
|
|||||||
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
|
# See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
|
||||||
|
|
||||||
[dependencies]
|
[dependencies]
|
||||||
|
clap = { version = "4.3.0", features = ["derive", "env"] }
|
||||||
|
diesel = { version = "2.0.4", features = ["postgres"] }
|
8
geneit_backend/diesel.toml
Normal file
8
geneit_backend/diesel.toml
Normal file
@ -0,0 +1,8 @@
|
|||||||
|
# For documentation on how to configure this file,
|
||||||
|
# see https://diesel.rs/guides/configuring-diesel-cli
|
||||||
|
|
||||||
|
[print_schema]
|
||||||
|
file = "src/schema.rs"
|
||||||
|
|
||||||
|
[migrations_directory]
|
||||||
|
dir = "migrations"
|
0
geneit_backend/migrations/.keep
Normal file
0
geneit_backend/migrations/.keep
Normal file
@ -0,0 +1,6 @@
|
|||||||
|
-- This file was automatically created by Diesel to setup helper functions
|
||||||
|
-- and other internal bookkeeping. This file is safe to edit, any future
|
||||||
|
-- changes will be added to existing projects as new migrations.
|
||||||
|
|
||||||
|
DROP FUNCTION IF EXISTS diesel_manage_updated_at(_tbl regclass);
|
||||||
|
DROP FUNCTION IF EXISTS diesel_set_updated_at();
|
@ -0,0 +1,36 @@
|
|||||||
|
-- This file was automatically created by Diesel to setup helper functions
|
||||||
|
-- and other internal bookkeeping. This file is safe to edit, any future
|
||||||
|
-- changes will be added to existing projects as new migrations.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
-- Sets up a trigger for the given table to automatically set a column called
|
||||||
|
-- `updated_at` whenever the row is modified (unless `updated_at` was included
|
||||||
|
-- in the modified columns)
|
||||||
|
--
|
||||||
|
-- # Example
|
||||||
|
--
|
||||||
|
-- ```sql
|
||||||
|
-- CREATE TABLE users (id SERIAL PRIMARY KEY, updated_at TIMESTAMP NOT NULL DEFAULT NOW());
|
||||||
|
--
|
||||||
|
-- SELECT diesel_manage_updated_at('users');
|
||||||
|
-- ```
|
||||||
|
CREATE OR REPLACE FUNCTION diesel_manage_updated_at(_tbl regclass) RETURNS VOID AS $$
|
||||||
|
BEGIN
|
||||||
|
EXECUTE format('CREATE TRIGGER set_updated_at BEFORE UPDATE ON %s
|
||||||
|
FOR EACH ROW EXECUTE PROCEDURE diesel_set_updated_at()', _tbl);
|
||||||
|
END;
|
||||||
|
$$ LANGUAGE plpgsql;
|
||||||
|
|
||||||
|
CREATE OR REPLACE FUNCTION diesel_set_updated_at() RETURNS trigger AS $$
|
||||||
|
BEGIN
|
||||||
|
IF (
|
||||||
|
NEW IS DISTINCT FROM OLD AND
|
||||||
|
NEW.updated_at IS NOT DISTINCT FROM OLD.updated_at
|
||||||
|
) THEN
|
||||||
|
NEW.updated_at := current_timestamp;
|
||||||
|
END IF;
|
||||||
|
RETURN NEW;
|
||||||
|
END;
|
||||||
|
$$ LANGUAGE plpgsql;
|
@ -0,0 +1,2 @@
|
|||||||
|
-- This file should undo anything in `up.sql`
|
||||||
|
DROP table users;
|
@ -0,0 +1,12 @@
|
|||||||
|
-- Create table
|
||||||
|
CREATE TABLE users (
|
||||||
|
id SERIAL PRIMARY KEY,
|
||||||
|
email VARCHAR(255) NOT NULL,
|
||||||
|
password VARCHAR NULL,
|
||||||
|
reset_password_token VARCHAR(150) NULL,
|
||||||
|
time_create BIGINT NOT NULL,
|
||||||
|
time_gen_reset_token BIGINT NOT NULL DEFAULT 0,
|
||||||
|
time_activate BIGINT NOT NULL DEFAULT 0,
|
||||||
|
active BOOLEAN NOT NULL DEFAULT TRUE,
|
||||||
|
admin BOOLEAN NOT NULL DEFAULT FALSE
|
||||||
|
)
|
15
geneit_backend/src/schema.rs
Normal file
15
geneit_backend/src/schema.rs
Normal file
@ -0,0 +1,15 @@
|
|||||||
|
// @generated automatically by Diesel CLI.
|
||||||
|
|
||||||
|
diesel::table! {
|
||||||
|
users (id) {
|
||||||
|
id -> Int4,
|
||||||
|
email -> Varchar,
|
||||||
|
password -> Nullable<Varchar>,
|
||||||
|
reset_password_token -> Nullable<Varchar>,
|
||||||
|
time_create -> Int8,
|
||||||
|
time_gen_reset_token -> Int8,
|
||||||
|
time_activate -> Int8,
|
||||||
|
active -> Bool,
|
||||||
|
admin -> Bool,
|
||||||
|
}
|
||||||
|
}
|
Loading…
Reference in New Issue
Block a user